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Publications associées à la plateforme ABiMS
Dernières publications
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Mark Hoebeke, Aurélien Schmitt. HYDROMED ETL. 2024, ⟨swh:1:dir:90e66cf5b570c6dc902dec4a52888a52d2b43d73;origin=https://gitlab.sb-roscoff.fr/future-obs/wp5/hydrochimie-cotier-med.git;visit=swh:1:snp:90e8a6623c1dca2a582a51dcee2776cb09a75453;anchor=swh:1:rev:4947a300101e5333e0e343ad8d3ef367e7b7f0ff⟩. ⟨hal-04700031⟩
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Rodolfo Rondon, Catalina Valdés, Celine Cosseau, Elisa Bergami, César Antonio Cárdenas, et al.. Transcriptomic responses of Antarctic clam Laternula elliptica to nanoparticles, at single and combined exposures reveal ecologically relevant biomarkers. Ecotoxicology and Environmental Safety, 2024, 280, pp.116523. ⟨10.1016/j.ecoenv.2024.116523⟩. ⟨hal-04615510⟩
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David Benaben, Christophe Blanchet, Matéo Boudet, Guillaume Brysbaert, Anthony Bretaudeau, et al.. Services deployed on the IFB National Network of Computing Resources (NNCR). JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. , 2024. ⟨hal-04618059⟩
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Hugo Doré, Ulysse Guyet, Jade Leconte, Gregory Farrant, Benjamin Alric, et al.. Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies. The International Society of Microbiologial Ecology Journal, 2023, 17 (5), pp.720-732. ⟨10.1038/s41396-023-01386-0⟩. ⟨hal-04238382⟩
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Julie Lao, Pierre Marin, Romain Dallet, Fabien Mareuil, Alix De Toisy, et al.. ABRomics - an open access online platform on antimicrobial resistance to store, integrate, analyze and share multi-omics data. FEMS 2023 European Congress of Microbiology, Jul 2023, Congress Center Hamburg Hamburg, Germany, Germany. ⟨hal-04369134⟩
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Julie Lao, Pierre Marin, Romain Dallet, Fabien Mareuil, Alix De Toisy, et al.. ABRomics: An integrated multi-omics platform for antibiotic resistance research and public health. 9ème symposium sur la résistance aux antimicrobiens chez les animaux et dans l'environnement (ARAE 2023), Jul 2023, Vinci International Convention Centre, Tours, France. ⟨hal-04369175⟩
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Mélanie Pétéra, Yann Guitton, Charlotte Joly, Florence Souard, Etienne A Thévenot, et al.. Technological developments and opportunities with Workflow4Metabolomics. ISMB/ECCB 2023: The 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology, Jul 2023, Lyon, France. ⟨hal-04185176⟩
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Stéphane Mauger, Aurélien Baud, Gildas Le Corguillé, Gwenn Tanguy, Erwan Legeay, et al.. Genetic resources of macroalgae: Development of an efficient method using microsatellite markers in non-model organisms. Algal Research - Biomass, Biofuels and Bioproducts, 2023, 75, pp.103251. ⟨10.1016/j.algal.2023.103251⟩. ⟨hal-04206217⟩
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Mathilde Ferrieux, Louison Dufour, Hugo Doré, Morgane Ratin, Audrey Guéneuguès, et al.. Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas. Frontiers in Microbiology, 2022, 13, pp.893413. ⟨10.3389/fmicb.2022.893413⟩. ⟨hal-03768045⟩
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Frauke Leitner, Maria Carazo Jose, Johanna Bischof, Natalie Haley, Pauline Audergon, et al.. EOSC-Life D3.2 Report on the work of the initial demonstrators. Instruct-ERIC; CSIC; BSC; CRG; EMBL-HD; INRAE; CNRS; CCMAR; EMBRC ERIC; ALUFR; UNIVDUN; UNITO; ERINHA; CNR; FZJ; UNIMAN; NIB; UNI Bielefeld; Fraunhofer; Diamond; IMG; EATRIS. 2021. ⟨hal-04161943⟩
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Laurence Garczarek, Ulysse Guyet, Hugo Doré, Gregory Farrant, Mark Hoebeke, et al.. Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. Nucleic Acids Research, 2021, 49 (D1), pp.D667-D676. ⟨10.1093/nar/gkaa958⟩. ⟨hal-02988562⟩
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Mélanie Pétéra, Cécile Canlet, Romain Dallet, Yann Guitton, Gildas Le Corguillé, et al.. Technological developments and opportunities with Workflow4Metabolomics. European RFMF Metabomeeting 2020, Jan 2020, Toulouse, France. , 262 p., 2020, Oral and Poster Abstracts European RMF Metabomeeting 2020. ⟨hal-02497719⟩
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Delphine Nègre, Méziane Aite, Arnaud Belcour, Clémence Frioux, Loraine Brillet-Guéguen, et al.. Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus. Antioxidants , 2019, 8 (11), pp.564. ⟨10.3390/antiox8110564⟩. ⟨hal-02395080⟩
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Emmanuelle Soleilhac, Loraine Brillet-Guéguen, Véronique V. Roussel, Renaud Prudent, Bastien Touquet, et al.. Specific Targeting of Plant and Apicomplexa Parasite Tubulin through Differential Screening Using In Silico and Assay-Based Approaches. International Journal of Molecular Sciences, 2018, 19 (10), pp.3085. ⟨10.3390/ijms19103085⟩. ⟨hal-02106151⟩
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Maxime Endress, Céline Zatylny-Gaudin, Erwan Corre, Gildas Le Corguille, Louis Benoist, et al.. Crustacean cardioactive peptides Expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis. General and Comparative Endocrinology, 2018, 260, pp.67-79. ⟨10.1016/j.ygcen.2017.12.009⟩. ⟨hal-01744294⟩
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Alexandre Leduc, Céline Zatylny-Gaudin, Marie Robert, Erwan Corre, Gildas Le Corguille, et al.. Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets. BMC Genomics, 2018, 19, pp.396. ⟨10.1186/s12864-018-4780-0⟩. ⟨hal-01973434⟩
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Tristan Barbeyron, Loraine Brillet-Guéguen, Wilfrid Carré, Cathelène Carrière, Christophe C. Caron, et al.. Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity. PLoS ONE, 2016, 11 (10), pp.e0164846. ⟨10.1371/journal.pone.0164846⟩. ⟨hal-01409013⟩
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Dominique Boeuf, Stéphane Audic, Loraine Brillet-Guéguen, Christophe Caron, Christian Jeanthon. MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution. Database - The journal of Biological Databases and Curation, 2015, 2015, pp. bav080. ⟨10.1093/database/bav080⟩. ⟨hal-01218501⟩
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Mélanie Pétéra, Gildas Le Corguille, Marion Landi, Misharl Monsoor, Marie Tremblay-Franco, et al.. Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. JOBIM 2015 (16e édition des Journées Ouvertes en Biologie, Informatique et Mathématiques ), Jul 2015, Clermont-Ferrand, France. , 2015, JOBIM (16e édition des Journées Ouvertes en Biologie, Informatique et Mathématiques ). ⟨10.1093/bioinformatics/btu813⟩. ⟨hal-01214152⟩
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Jonas Collén, Betina Porcel, Wilfrid Carré, Steven G Ball, Cristian Chaparro, et al.. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩. ⟨hal-01073830⟩
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Susana M. Coelho, Olivier Godfroy, Alok Arun, Gildas Le Corguillé, Akira F. Peters, et al.. OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus. Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (28), pp.11518-11523. ⟨10.1073/pnas.1102274108⟩. ⟨hal-01806390⟩
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Christian Kolowrat, Frédéric Partensky, Daniella Mella-Flores, Gildas Le Corguillé, Christophe Boutte, et al.. Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511.. BMC Microbiology, 2010, 10, pp.204. ⟨10.1186/1471-2180-10-204⟩. ⟨hal-00529495⟩
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Svenja Heesch, Ga Youn Cho, Akira F Peters, Gildas Le Corguillé, Cyril Falentin, et al.. A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence. New Phytologist, 2010, 188 (1), pp.42-51. ⟨10.1111/j.1469-8137.2010.03273.x⟩. ⟨hal-01806415⟩
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Gildas Le Corguillé, Gareth Pearson, Marta Valente, Carla Viegas, Bernhard Gschloessl, et al.. Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids. BMC Evolutionary Biology, 2009, 9, pp.253. ⟨10.1186/1471-2148-9-253⟩. ⟨hal-01806420⟩