index - Fédération de recherche de Roscoff

Lisa Mazéas, Ahlem Bouguerba-Collin, J. Mark Cock, France Denoeud, Olivier Godfroy, et al.. Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history. BMC Genomics, 2024, 25 (1), pp.950. ⟨10.1186/s12864-024-10811-3⟩. ⟨hal-04734202⟩
Mark Hoebeke, Aurélien Schmitt. HYDROMED ETL. 2024, ⟨swh:1:dir:90e66cf5b570c6dc902dec4a52888a52d2b43d73;origin=https://gitlab.sb-roscoff.fr/future-obs/wp5/hydrochimie-cotier-med.git;visit=swh:1:snp:90e8a6623c1dca2a582a51dcee2776cb09a75453;anchor=swh:1:rev:4947a300101e5333e0e343ad8d3ef367e7b7f0ff⟩. ⟨hal-04700031⟩
Rodolfo Rondon, Catalina Valdés, Celine Cosseau, Elisa Bergami, César Antonio Cárdenas, et al.. Transcriptomic responses of Antarctic clam Laternula elliptica to nanoparticles, at single and combined exposures reveal ecologically relevant biomarkers. Ecotoxicology and Environmental Safety, 2024, 280, pp.116523. ⟨10.1016/j.ecoenv.2024.116523⟩. ⟨hal-04615510⟩
Konogan Bourhy, Laurent Bouri, Christophe Bruley, Olivier Collin, Frédéric De Lamotte, et al.. Orchestrating data flows throughout their whole life cycle. JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. , 2024. ⟨hal-04618277⟩
David Benaben, Christophe Blanchet, Matéo Boudet, Guillaume Brysbaert, Anthony Bretaudeau, et al.. Services deployed on the IFB National Network of Computing Resources (NNCR). JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. , 2024. ⟨hal-04618059⟩
Karine Massau, Byte-Sea Consortium, Erwan Corre. BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme. JOBIM 2024 - Journées ouvertes en biologie, informatique et mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024. ⟨hal-04693601⟩
Bérénice Batut, Gildas Le Corguillé, Yvan Le Bras, Loraine Brillet-Guéguen, Fabien Mareuil, et al.. Exploring the richness of the French Galaxy Ecosystem. GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. , pp.1-1, 2024, ⟨10.7490/f1000research.1119765.1⟩. ⟨hal-04644779⟩
C. Kieffer, N. Primas, S. Hutter, A. Merckx, L. Reininger, et al.. Target fishing reveals PfPYK-1 and PfRab6 as potential targets of an antiplasmodial 4-anilino-2-trichloromethylquinazoline hit compound. Bioorganic and Medicinal Chemistry, 2024, 102, pp.117654. ⟨10.1016/j.bmc.2024.117654⟩. ⟨hal-04503278⟩
Raphaël Morard, Kate Darling, Agnes Weiner, Christiane Hassenrück, Chiara Vanni, et al.. The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton. Biological Reviews, 2024, 99 (4), pp.1218-1241. ⟨10.1111/brv.13065⟩. ⟨hal-04552961⟩
Jean‐charles Leclerc, Maéva Gonzalez, Jean-Philippe Pezy, Aurore Raoux, Romain Crec'Hriou, et al.. Multi-scale patterns in the structure of fish and fouling communities associated with seaweeds in marinas. Marine Ecology Progress Series, 2024, 742, pp.1-19. ⟨10.3354/meps14641⟩. ⟨hal-04760065⟩
Louise Fouqueau, L Reynes, F Tempera, T Bajjouk, A Blanfuné, et al.. Seascape genetic study on Laminaria digitata underscores the critical role of sampling schemes. Marine Ecology Progress Series, 2024. ⟨hal-04624490⟩
Anthony Champiré, Rayan Berabez, Abdennour Braka, Aurélie Cosson, Justine Corret, et al.. Tetrahydropyridine LIMK inhibitors: Structure activity studies and biological characterization. European Journal of Medicinal Chemistry, 2024, 271, pp.116391-116391. ⟨10.1016/j.ejmech.2024.116391⟩. ⟨hal-04575964⟩
Pierre Galand, Hans-Joachim Ruscheweyh, Guillem Salazar, Corentin Hochart, Nicolas Henry, et al.. Diversity of the Pacific Ocean coral reef microbiome. Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩. ⟨hal-04176291⟩
Odysseas A. Archontikis, Ian Probert, Luc Beaufort, Rosalind E.M. Rickaby, Dmitry A. Filatov, et al.. Taxonomic and nomenclatural notes on the coccolithophore Gephyrocapsa huxleyi (Noelaerhabdaceae, Haptophyta) and related species. Notulae algarum, 2023, 307, pp.1-9. ⟨hal-04719063⟩
Mahfam Moradi, Alireza Mousavi, Zahra Emamgholipour, Johanna Giovannini, Setareh Moghimi, et al.. Quinazoline-based VEGFR-2 inhibitors as potential anti-angiogenic agents: A contemporary perspective of SAR and molecular docking studies. European Journal of Medicinal Chemistry, 2023, 259, pp.115626. ⟨10.1016/j.ejmech.2023.115626⟩. ⟨hal-04165313⟩
Fatima Ezzahraa El Houjjaji, Mark Hoebeke. Développement d'outils Web Pour La Valorisation De Données De Biodiversité. Station Biologique de Roscoff; UNIVERSITÉ ABDELMALEK ESSAÂDI. 2023. ⟨hal-04257654⟩
Qikun Xing, Léa Cabioch, Antoine Desrut, Gildas Le Corguillé, Sylvie Rousvoal, et al.. Aldehyde perception induces specific molecular responses in Laminaria digitata and affects algal consumption by a specialist grazer. The Plant Journal, In press, ⟨10.1111/tpj.16450⟩. ⟨hal-04197531⟩
Adeline Ribeiro E Silva, Mamadou Amadou Diallo, Alix Sausset, Thomas Robert, Stéphane Bach, et al.. Overexpression of Eimeria tenella Rhoptry Kinase 2 Induces Early Production of Schizonts. Microbiology Spectrum, 2023, 11 (4), pp.e0013723. ⟨10.1128/spectrum.00137-23⟩. ⟨hal-04168152⟩
Hugo Doré, Ulysse Guyet, Jade Leconte, Gregory Farrant, Benjamin Alric, et al.. Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies. The International Society of Microbiologial Ecology Journal, 2023, 17 (5), pp.720-732. ⟨10.1038/s41396-023-01386-0⟩. ⟨hal-04238382⟩
Aline Hatem, Gwendal Poussereau, Martin Gachenot, Laurent Pérès, Guillaume Bouyer, et al.. Dual action of Dooku1 on PIEZO1 channel in human red blood cells. Frontiers in Physiology, 2023, 14, ⟨10.3389/fphys.2023.1222983⟩. ⟨hal-04409655⟩
Julie Lao, Pierre Marin, Romain Dallet, Fabien Mareuil, Alix De Toisy, et al.. ABRomics - an open access online platform on antimicrobial resistance to store, integrate, analyze and share multi-omics data. FEMS 2023 European Congress of Microbiology, Jul 2023, Congress Center Hamburg Hamburg, Germany, Germany. ⟨hal-04369134⟩
Julie Lao, Pierre Marin, Romain Dallet, Fabien Mareuil, Alix De Toisy, et al.. ABRomics: An integrated multi-omics platform for antibiotic resistance research and public health. 9ème symposium sur la résistance aux antimicrobiens chez les animaux et dans l'environnement (ARAE 2023), Jul 2023, Vinci International Convention Centre, Tours, France. ⟨hal-04369175⟩
Agnieszka P Lipinska, Stacy A Krueger-Hadfield, Olivier Godfroy, Simon M Dittami, Lígia Ayres-Ostrock, et al.. The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species. Genome Biology and Evolution, 2023, 15 (7), pp.evad124. ⟨10.1093/gbe/evad124⟩. ⟨hal-04190579⟩
Anaïs Rey, Frédérique Viard, Anne Lizé, Erwan Corre, Alice Valentini, et al.. Coastal rocky reef fish monitoring in the context of the Marine Strategy Framework Directive: Environmental DNA metabarcoding complements underwater visual census. Ocean and Coastal Management, 2023, 241, pp.106625. ⟨10.1016/j.ocecoaman.2023.106625⟩. ⟨hal-04123930⟩
Mélanie Pétéra, Yann Guitton, Charlotte Joly, Florence Souard, Etienne A Thévenot, et al.. Technological developments and opportunities with Workflow4Metabolomics. ISMB/ECCB 2023: The 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology, Jul 2023, Lyon, France. ⟨hal-04185176⟩
Charlotte Eckmann, Jessica Eberle, Fabian Wittmers, Susanne Wilken, Kristin Bergauer, et al.. Eukaryotic algal community composition in tropical environments from solar salterns to the open sea. Frontiers in Marine Science, 2023, 10, ⟨10.3389/fmars.2023.1131351⟩. ⟨hal-04273229⟩
Arunima Sen, Gwenn Tanguy, Pierre E Galand, Ann C Andersen, Stephane Hourdez. Bacterial symbiont diversity in Arctic seep Oligobrachia siboglinids. Animal Microbiome, 2023, 5 (1), pp.30. ⟨10.1186/s42523-023-00251-x⟩. ⟨hal-04213503⟩
Chirine Toumi, Miquel De Cáceres, Jacques Grall, Aurélien Boyé, Éric Thiébaut, et al.. Long-term coastal macrobenthic Community Trajectory Analysis reveals habitat-dependent stability patterns. Ecography, 2023, ⟨10.1111/ecog.06489⟩. ⟨hal-04095678⟩
Amandine Thomas, Mark Hoebeke, Erwann Quimbert, Mickaël Tréguer, Alain Lefebvre, et al.. Portail vitrine de l’IR ILICO. MeriGéo 2023 - quatrième édition du colloque national dédié à la géomatique appliquée au milieu marin, Mar 2023, Le Havre, France. . ⟨hal-04059807⟩
Mark Stam, Pernelle Lelièvre, Mark Hoebeke, Erwan Corre, Tristan Barbeyron, et al.. SulfAtlas, the sulfatase database: state of the art and new developments. Nucleic Acids Research, 2023, 51 (D1), pp.D647-D653. ⟨10.1093/nar/gkac977⟩. ⟨hal-03948623⟩
Mohamed Hasyeoui, Frédéric Lassagne, William Erb, Manal Nael, Khaled Elokely, et al.. Oxazolo[5,4-f]quinoxaline-type selective inhibitors of glycogen synthase kinase-3α (GSK-3α): Development and impact on temozolomide treatment of glioblastoma cells. Bioorganic Chemistry, 2023, 134, pp.106456. ⟨10.1016/j.bioorg.2023.106456⟩. ⟨hal-04059446⟩
Stéphane Mauger, Aurélien Baud, Gildas Le Corguillé, Gwenn Tanguy, Erwan Legeay, et al.. Genetic resources of macroalgae: Development of an efficient method using microsatellite markers in non-model organisms. Algal Research - Biomass, Biofuels and Bioproducts, 2023, 75, pp.103251. ⟨10.1016/j.algal.2023.103251⟩. ⟨hal-04206217⟩
Hetty Kleinjan, Clémence Frioux, Gianmaria Califano, Méziane Aite, Enora Fremy, et al.. Insights into the potential for mutualistic and harmful host‐microbe interactions affecting brown alga freshwater acclimation. Molecular Ecology, In press, 32 (3), pp.703-723. ⟨10.1111/mec.16766⟩. ⟨hal-03868898⟩
Patrick Cormier, Agnès Boutet, Pierre Colas, Sandrine Ruchaud, Stéphane Bach, et al.. The Roscoff Biological Station in the era of cellular and molecular biology: Focus on the 50 last years of research on marine animals. Cahiers de Biologie Marine, 2023, 64 (1), pp.35-52. ⟨10.21411/CBM.A.C705BF49⟩. ⟨hal-04254376⟩
Nicolas Mast, William Erb, Lionel Nauton, Pascale Moreau, Olivier Mongin, et al.. From benzofuro-, benzothieno- and 10-methylindolo-[2,3-b]-fused benzothiopyrano[4,3,2-de]quinolines to the corresponding benzothiopyrano[4,3,2-de]1,8-naphthyridines: synthesis and properties of these hexacyclic heteroaromatic compounds. New Journal of Chemistry, 2023, 47 (1), pp.258-283. ⟨10.1039/D2NJ04567B⟩. ⟨hal-03904365⟩
Jan Strauss, Chang Jae Choi, Jonathan Grone, Fabian Wittmers, Valeria Jimenez, et al.. The Bay of Bengal exposes abundant photosynthetic picoplankton and newfound diversity along salinity‐driven gradients. Environmental Microbiology, 2023, ⟨10.1111/1462-2920.16431⟩. ⟨hal-04273232⟩
Marwa Dhiabi, Ali Bouattour, Mehdi Fakhfakh, Souhir Abid, Ludovic Paquin, et al.. Practical approach to N-benzyl derivatives of 2-amino-8-methoxy-4H-chromene-3-carbonitrile by reductive amination: Exploration of their effects against protein kinases and in silico ADME profiling. Journal of Molecular Structure, 2023, 1274 (Part 1), pp.134319. ⟨10.1016/j.molstruc.2022.134319⟩. ⟨hal-03867314⟩
Daniel Vaulot, Gust Bilcke, Peter Chaerle, Angela Falciatore, Priscillia Gourvil, et al.. Culturing Diatoms. Johannes Goessling; Johann Lavaud; João Serôdio. Diatom Photosynthesis: From Primary Production to High Value Molecules, Wiley-Scrivener, In press. ⟨hal-04000031v2⟩
Hiroto Kaneko, Hisashi Endo, Nicolas Henry, Cédric Berney, Frédéric Mahé, et al.. Predicting global distributions of eukaryotic plankton communities from satellite data. ISME Communications, 2023, 3 (1), pp.101. ⟨10.1038/s43705-023-00308-7⟩. ⟨hal-04394784⟩
Juan José Pierella Karlusich, Eric Pelletier, Lucie Zinger, Fabien Lombard, Adriana Zingone, et al.. A robust approach to estimate relative phytoplankton cell abundances from metagenomes. Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩. ⟨hal-03559541⟩
Julie Boisard, Evelyne Duvernois-Berthet, Linda Duval, Joseph Schrével, Laure Guillou, et al.. Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery. BMC Genomics, 2022, 23 (1), pp.485. ⟨10.1186/s12864-022-08700-8⟩. ⟨hal-03862695⟩
Marie La Rivière, Juliette delavenne, A.-L. Janson, Salomé Andres, Thibaut de Bettignies, et al.. Fiches descriptives des habitats marins benthiques de la Manche, de la Mer du Nord et de l’Atlantique. Patrinat (OFB-MNHN-CNRS). 2022, pp.578. ⟨mnhn-04155798⟩
Claire Delehouzé, Arnaud Comte, Marcelle Hauteville, Peter G Goekjian, Marie-Thérèse Dimanche-Boitrel, et al.. Nigratine as first-in-class dual inhibitor of necroptosis and ferroptosis regulated cell death. 2022. ⟨hal-03867390⟩
Mark Hoebeke, Jean-Michel Aroumougom. Linux for Beginners. Licence. Station Biologique de Roscoff, France. 2022. ⟨hal-04029594⟩
Hiroto Kaneko, Hisashi Endo, Nicolas Henry, Cédric Berney, Frédéric Mahé, et al.. Global observation of plankton communities from space. 2022. ⟨hal-03855690⟩
Flavienne Bruyant, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Lise Artigue, et al.. The Green Edge cruise: Understanding the onset, life and fate of the Arctic phytoplankton spring bloom. Earth System Science Data, 2022, 14, pp.4607-4642. ⟨10.5194/essd-2022-41⟩. ⟨hal-03782664⟩
Lain Pavot, Mélanie Pétéra, Nils Paulhe, Yann Guitton, Gildas Le Corguillé, et al.. Developments and opportunities with Workflow4Metabolomics. Analytics 2022, Sep 2022, Nantes, France. ⟨hal-03781084⟩
Lain Pavot, Mélanie Pétéra, Nils Paulhe, Yann Guitton, Gildas Le Corguillé, et al.. Update on technological developments and opportunities with Workflow4Metabolomics. Analytics 2022, Sep 2022, Nantes, France. . ⟨hal-03776462⟩
Maxime Endress, Céline Zatylny-Gaudin, Jérôme Leprince, Benjamin Lefranc, Erwan Corre, et al.. Structural and functional characterization of orcokinin B-like neuropeptides in the cuttlefish ($Sepia\ officinalis$). Marine drugs, 2022, 20 (8), pp.505. ⟨10.3390/md20080505⟩. ⟨hal-03777035⟩
Daniel Richter, Romain Watteaux, Thomas Vannier, Jade Leconte, Paul Frémont, et al.. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩. ⟨hal-02399723v2⟩

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